Citations¶

GUNC: Detection of Chimerism and Contamination in Prokaryotic Genomes¶

Askarbek Orakov, Anthony Fullam, Luis Pedro Coelho, Supriya Khedkar, Damian Szklarczyk, Daniel R. Mende, Thomas SB Schmidt, Peer Bork

Genome Biol 22, 178 (2021) doi: https://doi.org/10.1186/s13059-021-02393-0

bioRxiv 2020.12.16.422776; doi: https://doi.org/10.1101/2020.12.16.422776

Software used by GUNC¶

Prodigal¶

Prodigal: prokaryotic gene recognition and translation initiation site identification¶

Hyatt, D., Chen, GL., LoCascio, P.F. et al.

BMC Bioinformatics 11, 119 (2010). https://doi.org/10.1186/1471-2105-11-119

Prodigal GitHub

Diamond¶

Sensitive protein alignments at tree-of-life scale using DIAMOND¶

Buchfink B, Reuter K, Drost HG

Nature Methods 18, 366-368 (2021). doi:10.1038/s41592-021-01101-x